PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.254010.1
Common NameCsa_3G150010, LOC101203445
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 191aa    MW: 21135.4 Da    PI: 8.4941
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.254010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.44e-11249454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    ah ++Er+RR+++N+ +  Lr+l P+    + k+ + a+i   ++e+Ik+L
  Cucsa.254010.1  2 AHIAVERNRRRQMNEHLRVLRSLTPSF---YIKRGDQASIIGGVIEFIKEL 49
                    8*************************9...9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.32E-11154No hitNo description
PROSITE profilePS5088814.329149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-14162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-12261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-8249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-9455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAHIAVERNR RRQMNEHLRV LRSLTPSFYI KRGDQASIIG GVIEFIKELH QVLQSLESNK  60
RRRKSISPSP GPSPKAQLVA LGSDNSPFGF ENGVDVGACC NSSVADVEAK ISGSNVVLKI  120
ISRRIPGQLP KMIGVFERLS FEVLHLNISS MDDTVLYSFV VKIGLECQLS LEELAFEVQQ  180
SFCSQLYLCQ *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650991.11e-137PREDICTED: transcription factor MUTE
SwissprotQ9M8K66e-82MUTE_ARATH; Transcription factor MUTE
TrEMBLA0A0A0L8U91e-137A0A0A0L8U9_CUCSA; Uncharacterized protein
STRINGVIT_05s0020g02700.t015e-92(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112523036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.12e-77bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]